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    Pcdhb2 protocadherin beta 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498843, updated on 9-Dec-2024

    Summary

    Official Symbol
    Pcdhb2provided by RGD
    Official Full Name
    protocadherin beta 2provided by RGD
    Primary source
    RGD:1563132
    See related
    EnsemblRapid:ENSRNOG00000039476 AllianceGenome:RGD:1563132
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563132
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. Orthologous to human PCDHB2 (protocadherin beta 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Pcdhb2 in Genome Data Viewer
    Location:
    18p11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (29280004..29282790)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29005996..29008782)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30375798..30378194)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial-like Neighboring gene protocadherin beta 1 Neighboring gene protocadherin beta 3 Neighboring gene protocadherin beta 4

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding  
    Component Evidence Code Pubs
    is_active_in plasma membrane  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109123.2 → NP_001102593.2  protocadherin beta-2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A6J358, F1M7D0
      Related
      ENSRNOP00000057239.3, ENSRNOT00000060497.4
      Conserved Domains (3) summary
      cd11304
      Location:243 → 339
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:27 → 108
      Cadherin_2; Cadherin-like
      pfam16492
      Location:683 → 765
      Cadherin_C_2; Cadherin cytoplasmic C-terminal

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      29280004..29282790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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