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    Thap11 THAP domain containing 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307806, updated on 9-Dec-2024

    Summary

    Official Symbol
    Thap11provided by RGD
    Official Full Name
    THAP domain containing 11provided by RGD
    Primary source
    RGD:1310268
    See related
    EnsemblRapid:ENSRNOG00000019109 AllianceGenome:RGD:1310268
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including electron transport chain; negative regulation of neuron apoptotic process; and regulation of DNA-templated transcription. Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human THAP11 (THAP domain containing 11). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Thap11 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50656839..50658656)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33746977..33748794)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37825576..37827393)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene RAN binding protein 10 Neighboring gene uncharacterized LOC108348930 Neighboring gene translin-associated factor X interacting protein 1 Neighboring gene centromere protein T Neighboring gene nuclear transport factor 2 Neighboring gene enhancer of mRNA decapping 4

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol  
    located_in cytosol  
    is_active_in nucleoplasm  
    located_in nucleoplasm  

    General protein information

    Preferred Names
    THAP domain-containing protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107422.1NP_001100892.1  THAP domain-containing protein 11

      See identical proteins and their annotated locations for NP_001100892.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473972
      UniProtKB/TrEMBL
      A6IYS9, D3ZHX2
      Related
      ENSRNOP00000025815.2, ENSRNOT00000025815.5
      Conserved Domains (1) summary
      pfam05485
      Location:581
      THAP; THAP domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50656839..50658656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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