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    Prr30 proline rich 30 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100322897, updated on 9-Dec-2024

    Summary

    Official Symbol
    Prr30provided by RGD
    Official Full Name
    proline rich 30provided by RGD
    Primary source
    RGD:2315526
    See related
    EnsemblRapid:ENSRNOG00000025726 AllianceGenome:RGD:2315526
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PRR30 (proline rich 30). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 135.4) See more
    Orthologs
    NEW
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    Genomic context

    See Prr30 in Genome Data Viewer
    Location:
    6q14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (31135021..31137534)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25415069..25417582)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26780352..26782865)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 6 Neighboring gene transcription factor 23 Neighboring gene prolactin regulatory element binding Neighboring gene abhydrolase domain containing 1 Neighboring gene cell growth regulator with EF hand domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001170709.1NP_001164180.1  proline-rich protein 30

      See identical proteins and their annotated locations for NP_001164180.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079445
      UniProtKB/TrEMBL
      A6HAA0, D3ZWN2
      Related
      ENSRNOP00000009916.4, ENSRNOT00000009916.8
      Conserved Domains (1) summary
      pfam15728
      Location:1400
      DUF4679; Domain of unknown function (DUF4679)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      31135021..31137534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)