U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Dnajc5g DnaJ heat shock protein family (Hsp40) member C5 gamma [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366567, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Dnajc5gprovided by RGD
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C5 gammaprovided by RGD
    Primary source
    RGD:1307426
    See related
    EnsemblRapid:ENSRNOG00000026578 AllianceGenome:RGD:1307426
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasm and membrane. Orthologous to human DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 153.4) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Dnajc5g in Genome Data Viewer
    Location:
    6q14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (30980051..30984218, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25260087..25264251, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26625526..26629651, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 54 Neighboring gene urocortin Neighboring gene solute carrier family 30 member 3 Neighboring gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    dnaJ homolog subfamily C member 5G
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 5 gamma

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013242.1 → NP_001013260.1  dnaJ homolog subfamily C member 5G

      See identical proteins and their annotated locations for NP_001013260.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083671
      UniProtKB/TrEMBL
      F7EQX9, Q5XIK9
      Related
      ENSRNOP00000029345.6, ENSRNOT00000031244.7
      Conserved Domains (2) summary
      COG0484
      Location:16 → 86
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:17 → 79
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      30980051..30984218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006239827.5 → XP_006239889.1  dnaJ homolog subfamily C member 5G isoform X3

      UniProtKB/TrEMBL
      A6HA78
      Conserved Domains (2) summary
      COG0484
      Location:16 → 86
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:17 → 79
      DnaJ; DnaJ domain

    2. XM_017594245.3 → XP_017449734.1  dnaJ homolog subfamily C member 5G isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZKL6, F7EQX9
      Related
      ENSRNOP00000078305.1, ENSRNOT00000108390.2

    3. XM_017594246.3 → XP_017449735.1  dnaJ homolog subfamily C member 5G isoform X2

      UniProtKB/TrEMBL
      F7EQX9

    RNA

    1. XR_001838187.3 RNA Sequence

    2. XR_001838186.3 RNA Sequence

    3. XR_592895.4 RNA Sequence

    4. XR_010052126.1 RNA Sequence

    5. XR_001838184.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools