U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lypd8l2 LY6/PLAUR domain containing 8 like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691352, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lypd8l2provided by RGD
    Official Full Name
    LY6/PLAUR domain containing 8 like 2provided by RGD
    Primary source
    RGD:1585065
    See related
    EnsemblRapid:ENSRNOG00000038422 AllianceGenome:RGD:1585065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Liver (RPKM 21.0), Uterus (RPKM 10.3) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lypd8l2 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (43490649..43495697, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (42990237..42995285, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (44238354..44243402, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 2 subfamily T member 29B, pseudogene 1 Neighboring gene olfactory receptor family 2 subfamily AB member 1 Neighboring gene olfactory receptor family 11 subfamily L member 3 Neighboring gene tripartite motif-containing 58

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109638.1NP_001103108.1  Protein RoBo-1-like precursor

      See identical proteins and their annotated locations for NP_001103108.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HEU6, D3ZFP5
      Related
      ENSRNOP00000055313.2, ENSRNOT00000058517.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      43490649..43495697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)