Linc00176 long intergenic non-protein coding RNA 176 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Linc00176provided by RGD
Official Full Name: long intergenic non-protein coding RNA 176provided by RGD
Primary source: RGD:1561282
See related: EnsemblRapid:ENSRNOG00000051498 AllianceGenome:RGD:1561282
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1561282
Summary: Predicted to enable several functions, including identical protein binding activity; protein-macromolecule adaptor activity; and ribonucleoprotein complex binding activity. Predicted to be involved in RNA localization; positive regulation of transcription by RNA polymerase II; and spliceosomal tri-snRNP complex assembly. Predicted to be located in nuclear speck. Predicted to be part of nucleus. Orthologous to human C20orf204 (chromosome 20 open reading frame 204). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Thymus (RPKM 21.9), Kidney (RPKM 9.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q43

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (189148857..189152647)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (168771350..168775133)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (177163038..177166874)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables identical protein binding	IEA Inferred from Electronic Annotation more info
enables protein-macromolecule adaptor activity	IEA Inferred from Electronic Annotation more info
enables ribonucleoprotein complex binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA localization	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in spliceosomal tri-snRNP complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U2-type precatalytic spliceosome	IEA Inferred from Electronic Annotation more info
part_of U4/U6 x U5 tri-snRNP complex	IEA Inferred from Electronic Annotation more info
part_of U5 snRNP	IEA Inferred from Electronic Annotation more info
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info
located_in nuclear speck	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: long intergenic non-protein coding RNA 176

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109213.1 → NP_001102683.1 long intergenic non-protein coding RNA 176 precursor

See identical proteins and their annotated locations for NP_001102683.1

Status: PROVISIONAL

Source sequence(s)

CH474066

UniProtKB/TrEMBL

A6KLY6, D3ZCA7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086021.1 Reference GRCr8

Range

189148857..189152647

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039105721.2 → XP_038961649.1 long intergenic non-protein coding RNA 176 isoform X1
XM_039105722.2 → XP_038961650.1 long intergenic non-protein coding RNA 176 isoform X2
XM_039105723.2 → XP_038961651.1 long intergenic non-protein coding RNA 176 isoform X3

Related

ENSRNOP00000062368.2, ENSRNOT00000066837.3