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    Tmem156 transmembrane protein 156 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498365, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tmem156provided by RGD
    Official Full Name
    transmembrane protein 156provided by RGD
    Primary source
    RGD:1562424
    See related
    EnsemblRapid:ENSRNOG00000026518 AllianceGenome:RGD:1562424
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM156 (transmembrane protein 156). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 106.3), Spleen (RPKM 78.0) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem156 in Genome Data Viewer
    Location:
    14p11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (43568131..43606109)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (43221464..43252453)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (44888902..44918377)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 51 like 1 Neighboring gene kelch-like family member 5 Neighboring gene uncharacterized LOC102556650 Neighboring gene family with sequence similarity 114, member A1 Neighboring gene toll-like receptor 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 156

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025138.2 → NP_001020309.1  transmembrane protein 156 isoform 3

      See identical proteins and their annotated locations for NP_001020309.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/Swiss-Prot
      Q5BK38
      UniProtKB/TrEMBL
      A0A8I5Y6N5
      Related
      ENSRNOP00000077717.1, ENSRNOT00000115778.2
      Conserved Domains (1) summary
      pfam15106
      Location:39 → 263
      TMEM156; TMEM156 protein family

    2. NM_001419205.1 → NP_001406134.1  transmembrane protein 156 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A0G2JU22, A6JDF5

    3. NM_001419206.1 → NP_001406135.1  transmembrane protein 156 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A6JDF5
      Related
      ENSRNOP00000088538.2, ENSRNOT00000104482.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      43568131..43606109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273463.1 → XP_063129533.1  transmembrane protein 156 isoform X2

    2. XM_039092289.2 → XP_038948217.1  transmembrane protein 156 isoform X1

      UniProtKB/TrEMBL
      A0A8I6GH70, A6JDF5
      Related
      ENSRNOP00000032292.5, ENSRNOT00000032273.6
      Conserved Domains (1) summary
      pfam15106
      Location:39 → 263
      TMEM156; TMEM156 protein family

    3. XM_063273465.1 → XP_063129535.1  transmembrane protein 156 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BK38.1 GenPept UniProtKB/Swiss-Prot:Q5BK38

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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