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    Ccdc89 coiled-coil domain containing 89 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293107, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc89provided by RGD
    Official Full Name
    coiled-coil domain containing 89provided by RGD
    Primary source
    RGD:1305335
    See related
    AllianceGenome:RGD:1305335
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305335
    Summary
    Predicted to be located in cytoplasm and nucleus. Orthologous to human CCDC89 (coiled-coil domain containing 89). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc89 in Genome Data Viewer
    Location:
    1q32
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (153798786..153800048)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (144386252..144387514)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (154606461..154607723)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 83 Neighboring gene uncharacterized LOC134485150 Neighboring gene synaptotagmin-like 2 Neighboring gene CREB/ATF bZIP transcription factor Neighboring gene transmembrane protein 126A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC189379

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 89

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134833.2 → NP_001128305.1  coiled-coil domain-containing protein 89

      See identical proteins and their annotated locations for NP_001128305.1

      Status: PROVISIONAL

      Source sequence(s)
      BC167063
      UniProtKB/Swiss-Prot
      B2RZ86
      UniProtKB/TrEMBL
      A6I635
      Conserved Domains (1) summary
      TIGR02168
      Location:53 → 313
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      153798786..153800048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RZ86.2 GenPept UniProtKB/Swiss-Prot:B2RZ86

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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