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    Tbc1d19 TBC1 domain family, member 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289657, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tbc1d19provided by RGD
    Official Full Name
    TBC1 domain family, member 19provided by RGD
    Primary source
    RGD:1304958
    See related
    EnsemblRapid:ENSRNOG00000003003 AllianceGenome:RGD:1304958
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304958
    Summary
    Orthologous to human TBC1D19 (TBC1 domain family member 19). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 104.4), Brain (RPKM 94.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tbc1d19 in Genome Data Viewer
    Location:
    14q11
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (61297193..61413106, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (57084305..57200221, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (59403930..59516854, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene cofilin 1, pseudogene 6 Neighboring gene stromal interaction molecule 2 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC102552214 Neighboring gene cholecystokinin A receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Functional dissection of Rab GTPases involved in primary cilium formation. Yoshimura S, et al. J Cell Biol, 2007 Jul 30. PMID 17646400, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    NOT involved_in regulation of cilium assembly ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    TBC1 domain family member 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106008.2 → NP_001099478.1  TBC1 domain family member 19

      See identical proteins and their annotated locations for NP_001099478.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166575
      UniProtKB/TrEMBL
      A0A8I5ZTK9, A6IJF4, B2GV89, F7FJU7
      Related
      ENSRNOP00000004030.5, ENSRNOT00000004030.8
      Conserved Domains (1) summary
      smart00164
      Location:248 → 466
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      61297193..61413106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272928.1 → XP_063128998.1  TBC1 domain family member 19 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZTK9
      Related
      ENSRNOP00000081767.2, ENSRNOT00000108180.2

    2. XM_063272931.1 → XP_063129001.1  TBC1 domain family member 19 isoform X4

    3. XM_063272929.1 → XP_063128999.1  TBC1 domain family member 19 isoform X2

    4. XM_063272930.1 → XP_063129000.1  TBC1 domain family member 19 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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