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    Ccdc148 coiled-coil domain containing 148 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311051, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc148provided by RGD
    Official Full Name
    coiled-coil domain containing 148provided by RGD
    Primary source
    RGD:1561169
    See related
    EnsemblRapid:ENSRNOG00000057740 AllianceGenome:RGD:1561169
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561169
    Summary
    Orthologous to human CCDC148 (coiled-coil domain containing 148). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 14.4), Brain (RPKM 13.4) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc148 in Genome Data Viewer
    Location:
    3q21
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (63765656..64040802, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (43356885..43631999, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (44892212..45210897, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102556145 Neighboring gene uridine phosphorylase 2 Neighboring gene basic proline-rich protein-like Neighboring gene plakophilin 4 Neighboring gene ribosomal protein S14, pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 148

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107732.2 → NP_001101202.1  coiled-coil domain-containing protein 148 isoform a

      See identical proteins and their annotated locations for NP_001101202.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6JF61, E9PU06
      Related
      ENSRNOP00000072674.1, ENSRNOT00000091777.3
      Conserved Domains (1) summary
      pfam17380
      Location:353 → 482
      DUF5401; Family of unknown function (DUF5401)

    2. NM_001431632.1 → NP_001418561.1  coiled-coil domain-containing protein 148 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6JF61, E9PU06

    3. NM_001431633.1 → NP_001418562.1  coiled-coil domain-containing protein 148 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    4. NM_001431634.1 → NP_001418563.1  coiled-coil domain-containing protein 148 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      B2RZ45

    5. NM_001431635.1 → NP_001418564.1  coiled-coil domain-containing protein 148 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      B2RZ45

    6. NM_001431637.1 → NP_001418566.1  coiled-coil domain-containing protein 148 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      B2RZ45

    7. NM_001431638.1 → NP_001418567.1  coiled-coil domain-containing protein 148 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      B2RZ45

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      63765656..64040802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104827.2 → XP_038960755.1  coiled-coil domain-containing protein 148 isoform X3

      UniProtKB/TrEMBL
      A0A8I6ANE7

    2. XM_039104821.2 → XP_038960749.1  coiled-coil domain-containing protein 148 isoform X1

      Conserved Domains (1) summary
      pfam17380
      Location:353 → 482
      DUF5401; Family of unknown function (DUF5401)

    3. XM_039104822.2 → XP_038960750.1  coiled-coil domain-containing protein 148 isoform X1

      UniProtKB/TrEMBL
      A6JF61, E9PU06
      Conserved Domains (1) summary
      pfam17380
      Location:353 → 482
      DUF5401; Family of unknown function (DUF5401)

    4. XM_063283612.1 → XP_063139682.1  coiled-coil domain-containing protein 148 isoform X1

      UniProtKB/TrEMBL
      A6JF61, E9PU06

    5. XM_063283613.1 → XP_063139683.1  coiled-coil domain-containing protein 148 isoform X1

      UniProtKB/TrEMBL
      A6JF61, E9PU06

    6. XM_039104823.2 → XP_038960751.1  coiled-coil domain-containing protein 148 isoform X1

      UniProtKB/TrEMBL
      A6JF61, E9PU06
      Conserved Domains (1) summary
      pfam17380
      Location:353 → 482
      DUF5401; Family of unknown function (DUF5401)

    7. XM_039104828.2 → XP_038960756.1  coiled-coil domain-containing protein 148 isoform X4

      Conserved Domains (1) summary
      COG1196
      Location:23 → 271
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    8. XM_063283614.1 → XP_063139684.1  coiled-coil domain-containing protein 148 isoform X4

    9. XM_039104826.2 → XP_038960754.1  coiled-coil domain-containing protein 148 isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:23 → 271
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_010064611.1 RNA Sequence

    2. XR_010064612.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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