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    Lratd1 LRAT domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313969, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lratd1provided by RGD
    Official Full Name
    LRAT domain containing 1provided by RGD
    Primary source
    RGD:1305779
    See related
    EnsemblRapid:ENSRNOG00000004084 AllianceGenome:RGD:1305779
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam84a; RGD1305779
    Summary
    Predicted to be involved in cell morphogenesis and cell motility. Orthologous to human LRATD1 (LRAT domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 92.7), Testes (RPKM 52.1) and 3 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Lratd1 in Genome Data Viewer
    Location:
    6q15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (42646515..42650988, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (36916969..36922143, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (39358285..39363458, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene mortality factor 4 like 1, pseudogene 9 Neighboring gene uncharacterized LOC108351358 Neighboring gene uncharacterized LOC134479342 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene F-box and WD repeat domain containing 2, pseudogene 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell motility ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein LRATD1
    Names
    family with sequence similarity 84, member A
    protein FAM84A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127299.1NP_001120771.1  protein LRATD1

      See identical proteins and their annotated locations for NP_001120771.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473947
      UniProtKB/TrEMBL
      A6HAR8, G3V9V1
      Related
      ENSRNOP00000060795.1, ENSRNOT00000065531.3
      Conserved Domains (1) summary
      cl21534
      Location:171251
      NLPC_P60; NlpC/P60 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      42646515..42650988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)