Ccdc113 coiled-coil domain containing 113 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ccdc113provided by RGD
Official Full Name: coiled-coil domain containing 113provided by RGD
Primary source: RGD:1565763
See related: EnsemblRapid:ENSRNOG00000051510 AllianceGenome:RGD:1565763
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1565763
Summary: Predicted to act upstream of or within cilium assembly. Predicted to be located in centriolar satellite and ciliary basal body. Predicted to be part of protein-containing complex. Orthologous to human CFAP263 (cilia and flagella associated protein 263). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Testes (RPKM 110.2), Lung (RPKM 33.8) and 3 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19p13

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (9503062..9522957, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (9497000..9516917, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (9912124..9932183, complement)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in cilium assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cilium assembly	ISO Inferred from Sequence Orthology more info
involved_in cilium assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in axoneme	IBA Inferred from Biological aspect of Ancestor more info
located_in centriolar satellite	ISO Inferred from Sequence Orthology more info
is_active_in ciliary basal body	IBA Inferred from Biological aspect of Ancestor more info
located_in ciliary basal body	ISO Inferred from Sequence Orthology more info
part_of protein-containing complex	IEA Inferred from Electronic Annotation more info
part_of protein-containing complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: coiled-coil domain-containing protein 113

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001427628.1 → NP_001414557.1 coiled-coil domain-containing protein 113

Status: VALIDATED

Source sequence(s)

JAXUCZ010000019

UniProtKB/TrEMBL

A0A0G2JWV4

Related

ENSRNOP00000070030.2, ENSRNOT00000085144.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086037.1 Reference GRCr8

Range

9503062..9522957 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039098119.2 → XP_038954047.1 coiled-coil domain-containing protein 113 isoform X1

UniProtKB/TrEMBL

A6JY03

Conserved Domains (1) summary

pfam13870
Location:135 → 309

DUF4201; Domain of unknown function (DUF4201)
XM_039098120.2 → XP_038954048.1 coiled-coil domain-containing protein 113 isoform X2

Conserved Domains (1) summary

pfam13870
Location:19 → 191

DUF4201; Domain of unknown function (DUF4201)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001191598.1: Suppressed sequence

Description

NM_001191598.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.