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    C1qtnf7 C1q and TNF related 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305423, updated on 9-Dec-2024

    Summary

    Official Symbol
    C1qtnf7provided by RGD
    Official Full Name
    C1q and TNF related 7provided by RGD
    Primary source
    RGD:1306978
    See related
    EnsemblRapid:ENSRNOG00000005094 AllianceGenome:RGD:1306978
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Adig; Ctrp7
    Summary
    Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Orthologous to human C1QTNF7 (C1q and TNF related 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 110.6), Heart (RPKM 42.0) and 6 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C1qtnf7 in Genome Data Viewer
    Location:
    14q21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (71680415..71792931, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (67467888..67580477, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (72011518..72122257, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene cytochrome c, somatic pseudogene Neighboring gene F-box and leucine-rich repeat protein 5 Neighboring gene coiled-coil and C2 domain containing 2A Neighboring gene protein BEX4-like Neighboring gene iron-sulfur cluster assembly 2, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular space  

    General protein information

    Preferred Names
    complement C1q tumor necrosis factor-related protein 7
    Names
    C1q and tumor necrosis factor related protein 7
    adiponectin g

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107221.1 → NP_001100691.1  complement C1q tumor necrosis factor-related protein 7 precursor

      See identical proteins and their annotated locations for NP_001100691.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473963
      UniProtKB/TrEMBL
      A0A3B0IP30, B2RYB7, F1M6V5
      Conserved Domains (2) summary
      pfam00386
      Location:149 → 273
      C1q; C1q domain
      pfam01391
      Location:59 → 108
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      71680415..71792931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039091942.2 → XP_038947870.1  complement C1q tumor necrosis factor-related protein 7 isoform X2

      UniProtKB/TrEMBL
      A0A3B0IP30, B2RYB7, F1M6V5
      Conserved Domains (2) summary
      pfam00386
      Location:149 → 273
      C1q; C1q domain
      pfam01391
      Location:59 → 108
      Collagen; Collagen triple helix repeat (20 copies)
    2. XM_006251073.5 → XP_006251135.1  complement C1q tumor necrosis factor-related protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A0G2QC08, A0A3B0IP30
      Related
      ENSRNOP00000061160.3, ENSRNOT00000064495.5
      Conserved Domains (2) summary
      pfam00386
      Location:156 → 280
      C1q; C1q domain
      pfam01391
      Location:66 → 115
      Collagen; Collagen triple helix repeat (20 copies)
    3. XM_039091943.2 → XP_038947871.1  complement C1q tumor necrosis factor-related protein 7 isoform X3

      Conserved Domains (2) summary
      pfam00386
      Location:74 → 198
      C1q; C1q domain
      pfam01391
      Location:8 → 62
      Collagen; Collagen triple helix repeat (20 copies)
    4. XM_006251075.4 → XP_006251137.1  complement C1q tumor necrosis factor-related protein 7 isoform X2

      See identical proteins and their annotated locations for XP_006251137.1

      UniProtKB/TrEMBL
      A0A3B0IP30, B2RYB7, F1M6V5
      Conserved Domains (2) summary
      pfam00386
      Location:149 → 273
      C1q; C1q domain
      pfam01391
      Location:59 → 108
      Collagen; Collagen triple helix repeat (20 copies)
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