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    Med9 mediator complex subunit 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497914, updated on 9-Dec-2024

    Summary

    Official Symbol
    Med9provided by RGD
    Official Full Name
    mediator complex subunit 9provided by RGD
    Primary source
    RGD:1563669
    See related
    EnsemblRapid:ENSRNOG00000053961 AllianceGenome:RGD:1563669
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563669
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED9 (mediator complex subunit 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 61.4), Kidney (RPKM 56.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Med9 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (45250229..45264988)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (44750667..44765464)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (46314639..46329374)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene COP9 signalosome subunit 3 Neighboring gene 5',3'-nucleotidase, mitochondrial Neighboring gene ras related dexamethasone induced 1 Neighboring gene phosphatidylethanolamine N-methyltransferase Neighboring gene DnaJ heat shock protein family (Hsp40) member A1, pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of core mediator complex  
    part_of mediator complex  
    part_of mediator complex  
    located_in nucleoplasm  
    located_in nucleus  

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127302.1 → NP_001120774.1  mediator of RNA polymerase II transcription subunit 9

      See identical proteins and their annotated locations for NP_001120774.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166759
      UniProtKB/TrEMBL
      A0A0G2KA28, B2RYF5, F1LS37
      Related
      ENSRNOP00000075235.2, ENSRNOT00000089724.3
      Conserved Domains (1) summary
      pfam07544
      Location:60 → 135
      Med9; RNA polymerase II transcription mediator complex subunit 9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      45250229..45264988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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