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    Oip5-as1 OIP5 antisense RNA 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910827, updated on 9-Dec-2024

    Summary

    Official Symbol
    Oip5-as1provided by RGD
    Official Full Name
    OIP5 antisense RNA 1provided by RGD
    Primary source
    RGD:6496122
    See related
    AllianceGenome:RGD:6496122
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cyrano
    Summary
    Predicted to enable miRNA inhibitor activity via base-pairing. Predicted to be involved in target-directed miRNA degradation. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OIP5-AS1 (OIP5 antisense RNA 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 652.5), Muscle (RPKM 320.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Oip5-as1 in Genome Data Viewer
    Location:
    3q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (127032122..127045658)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (106578309..106591845)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (111397051..111410587)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene exonuclease 3'-5' domain containing 1 Neighboring gene calcineurin-like EF-hand protein 1 Neighboring gene Opa interacting protein 5 Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130141.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      127032122..127045658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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