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    2310002L09Rikl RIKEN cDNA 2310002L09 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298139, updated on 9-Dec-2024

    Summary

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    Official Symbol
    2310002L09Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 2310002L09 likeprovided by RGD
    Primary source
    RGD:1359584
    See related
    EnsemblRapid:ENSRNOG00000045733 AllianceGenome:RGD:1359584
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 244.3) and Heart (RPKM 223.7) See more
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    Genomic context

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    See 2310002L09Rikl in Genome Data Viewer
    Location:
    5q31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (92738969..92752417, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (87692733..87706183, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (90338769..90353195)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene RAS and EF hand domain containing Neighboring gene uncharacterized LOC134478999 Neighboring gene dnaJ homolog subfamily B member 1 pseudogene Neighboring gene FERM domain containing 3 Neighboring gene protein disulfide-isomerase A5 pseudogene Neighboring gene COMM domain-containing protein 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    FERM domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013930.1 → NP_001013952.1  FERM domain-containing protein 3

      See identical proteins and their annotated locations for NP_001013952.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083698
      UniProtKB/TrEMBL
      A0A0G2K848, D3ZCP2, Q5XII3
      Related
      ENSRNOP00000055669.3, ENSRNOT00000058882.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      92738969..92752417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238294.4 → XP_006238356.1  FERM domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006238356.1

      UniProtKB/TrEMBL
      A0A0G2K848, A0A8I6A7Z9, A6J814
      Related
      ENSRNOP00000087543.1, ENSRNOT00000117577.2
    Nucleotide Protein Strain
    Heading Accession and Version

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