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    C5h1orf216 similar to human chromosome 1 open reading frame 216 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313595, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C5h1orf216provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 216provided by RGD
    Primary source
    RGD:1563072
    See related
    EnsemblRapid:ENSRNOG00000021609 AllianceGenome:RGD:1563072
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563072
    Summary
    Orthologous to human C1orf216 (chromosome 1 open reading frame 216). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 109.1), Adrenal (RPKM 48.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h1orf216 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (144168240..144189761)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138900045..138905267)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144630291..144636569)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene argonaute RISC component 4 Neighboring gene atherin-like Neighboring gene claspin Neighboring gene uncharacterized LOC120102980 Neighboring gene proteasome 20S subunit beta 2 Neighboring gene transcription factor AP-2 epsilon

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    UPF0500 protein C1orf216 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107981.3 → NP_001101451.1  UPF0500 protein C1orf216 homolog

      See identical proteins and their annotated locations for NP_001101451.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6ISB1, D3ZVC1
      Related
      ENSRNOP00000101242.1, ENSRNOT00000139657.1
      Conserved Domains (1) summary
      pfam15546
      Location:1 → 225
      DUF4653; Domain of unknown function (DUF4653)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      144168240..144189761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287759.1 → XP_063143829.1  UPF0500 protein C1orf216 homolog isoform X2

    2. XM_039110023.2 → XP_038965951.1  UPF0500 protein C1orf216 homolog isoform X1

      Related
      ENSRNOP00000032500.5, ENSRNOT00000029395.6
      Conserved Domains (1) summary
      pfam15546
      Location:31 → 255
      DUF4653; Domain of unknown function (DUF4653)
    Nucleotide Protein Strain
    Heading Accession and Version

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