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    Prr15l proline rich 15-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688163, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Prr15lprovided by RGD
    Official Full Name
    proline rich 15-likeprovided by RGD
    Primary source
    RGD:1592397
    See related
    EnsemblRapid:ENSRNOG00000049162 AllianceGenome:RGD:1592397
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PRR15L (proline rich 15 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 220.1), Lung (RPKM 154.1) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prr15l in Genome Data Viewer
    Location:
    10q31
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (82412934..82418897)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (81916491..81922454)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (84866781..84873434)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene microRNA 152 Neighboring gene COPI coat complex subunit zeta 2 Neighboring gene CDK5 regulatory subunit associated protein 3 Neighboring gene uncharacterized LOC134480861 Neighboring gene uncharacterized LOC102547955 Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene Sp2 transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    proline-rich protein 15-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398943.1 → NP_001385872.1  proline-rich protein 15-like protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I6A962, A6HIH5
      Related
      ENSRNOP00000090295.1, ENSRNOT00000106437.2
      Conserved Domains (1) summary
      pfam15321
      Location:6 → 87
      ATAD4; ATPase family AAA domain containing 4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      82412934..82418897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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