U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Cacfd1 calcium channel flower domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296599, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cacfd1provided by RGD
    Official Full Name
    calcium channel flower domain containing 1provided by RGD
    Primary source
    RGD:1311501
    See related
    EnsemblRapid:ENSRNOG00000005840 AllianceGenome:RGD:1311501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fwe; Fwe2; RGD1311501
    Summary
    Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi apparatus; plasma membrane; and synaptic vesicle. Orthologous to human CACFD1 (calcium channel flower domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 103.8), Muscle (RPKM 99.9) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cacfd1 in Genome Data Viewer
    Location:
    3p12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (30733958..30750237)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (10335881..10352437)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (5555807..5571205)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase-like domain containing 1 Neighboring gene REX4 homolog, 3'-5' exonuclease Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 13 Neighboring gene uncharacterized LOC102548484 Neighboring gene solute carrier family 2 member 6 Neighboring gene myomaker, myoblast fusion factor Neighboring gene ADAMTS-like 2

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport  
    Component Evidence Code Pubs
    located_in Golgi apparatus  
    located_in endomembrane system  
    located_in membrane  
    located_in plasma membrane  
    located_in synaptic vesicle  

    General protein information

    Preferred Names
    calcium channel flower homolog
    Names
    calcium channel flower domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106561.1NP_001100031.1  calcium channel flower homolog

      See identical proteins and their annotated locations for NP_001100031.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474001
      UniProtKB/Swiss-Prot
      D4A9I3
      UniProtKB/TrEMBL
      A6JTJ9
      Related
      ENSRNOP00000109944.1, ENSRNOT00000155871.1
      Conserved Domains (1) summary
      smart01077
      Location:34142
      Cg6151-P; Uncharacterized conserved protein CG6151-P

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      30733958..30750237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233756.5XP_006233818.1  calcium channel flower homolog isoform X1

      See identical proteins and their annotated locations for XP_006233818.1

      UniProtKB/Swiss-Prot
      D4A9I3
      UniProtKB/TrEMBL
      A6JTJ9
      Conserved Domains (1) summary
      smart01077
      Location:34142
      Cg6151-P; Uncharacterized conserved protein CG6151-P
    2. XM_008761633.4XP_008759855.1  calcium channel flower homolog isoform X3

      Conserved Domains (1) summary
      cl10918
      Location:34100
      Cg6151-P; Uncharacterized conserved protein CG6151-P
    3. XM_039104726.2XP_038960654.1  calcium channel flower homolog isoform X2

      UniProtKB/TrEMBL
      A0A8L2Q414
      Conserved Domains (1) summary
      cl10918
      Location:34106
      Cg6151-P; Uncharacterized conserved protein CG6151-P
    External link. Please review our privacy policy.