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    A630001G21Rikl RIKEN cDNA A630001G21 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501176, updated on 9-Dec-2024

    Summary

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    Official Symbol
    A630001G21Riklprovided by RGD
    Official Full Name
    RIKEN cDNA A630001G21 gene likeprovided by RGD
    Primary source
    RGD:1563917
    See related
    EnsemblRapid:ENSRNOG00000017273 AllianceGenome:RGD:1563917
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563917
    Summary
    Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 56.2), Thymus (RPKM 14.8) and 2 other tissues See more
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    Genomic context

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    See A630001G21Rikl in Genome Data Viewer
    Location:
    9q35
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (93831074..93853415, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86381777..86405385, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (92753666..92775830, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene SP110 nuclear body protein Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen Neighboring gene uncharacterized LOC103690562 Neighboring gene ribosomal protein S10, pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear autoantigen Sp-100; nuclear body protein SP140-like protein; sp110 nuclear body protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      93831074..93853415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268166.1 → XP_063124236.1  sp110 nuclear body protein isoform X7

    2. XM_056984623.2 → XP_056840603.1  sp110 nuclear body protein isoform X2

    3. XM_056984628.2 → XP_056840608.1  nuclear body protein SP140-like protein isoform X6

    4. XM_056984626.2 → XP_056840606.1  nuclear autoantigen Sp-100 isoform X4

    5. XM_056984622.2 → XP_056840602.1  nuclear autoantigen Sp-100 isoform X1

      UniProtKB/TrEMBL
      D4ACI5
      Related
      ENSRNOP00000036936.7, ENSRNOT00000029635.8

    6. XM_056984627.2 → XP_056840607.1  nuclear autoantigen Sp-100 isoform X5

    7. XM_056984625.2 → XP_056840605.1  nuclear body protein SP140-like protein isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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