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    Zfp775 zinc finger protein 775 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312309, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp775provided by RGD
    Official Full Name
    zinc finger protein 775provided by RGD
    Primary source
    RGD:1304910
    See related
    EnsemblRapid:ENSRNOG00000008362 AllianceGenome:RGD:1304910
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf775; RGD1304910
    Summary
    Predicted to be located in nucleus. Orthologous to human ZNF775 (zinc finger protein 775). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 45.8), Heart (RPKM 43.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp775 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78887940..78906196)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77557037..77575296)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78240326..78258545)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 61 Neighboring gene retinoic acid receptor responder 2 Neighboring gene hypothetical LOC100363281 Neighboring gene replication initiator 1 Neighboring gene similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29) Neighboring gene GTPase, IMAP family member 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 775

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107859.2 → NP_001101329.1  zinc finger protein 775

      See identical proteins and their annotated locations for NP_001101329.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6AHZ4, A6K0G5, D4A3N5
      Related
      ENSRNOP00000011041.3, ENSRNOT00000011041.6
      Conserved Domains (3) summary
      COG5048
      Location:307 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:450 → 470
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:295 → 320
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      78887940..78906196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236422.4 → XP_006236484.1  zinc finger protein 775 isoform X2

      See identical proteins and their annotated locations for XP_006236484.1

      UniProtKB/TrEMBL
      A0A8I6AHZ4, A6K0G5, D4A3N5
      Conserved Domains (3) summary
      COG5048
      Location:307 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:450 → 470
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:295 → 320
      zf-H2C2_2; Zinc-finger double domain

    2. XM_006236421.5 → XP_006236483.1  zinc finger protein 775 isoform X1

      See identical proteins and their annotated locations for XP_006236483.1

      UniProtKB/TrEMBL
      A0A8I6AAN4, A0A8I6AHZ4
      Conserved Domains (3) summary
      COG5048
      Location:352 → 400
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:495 → 515
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:340 → 365
      zf-H2C2_2; Zinc-finger double domain

    3. XM_063286028.1 → XP_063142098.1  zinc finger protein 775 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AHZ4, A6K0G5, D4A3N5
    Nucleotide Protein Strain
    Heading Accession and Version

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