U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tmem219 transmembrane protein 219 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308986, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tmem219provided by RGD
    Official Full Name
    transmembrane protein 219provided by RGD
    Primary source
    RGD:1560566
    See related
    EnsemblRapid:ENSRNOG00000020000 AllianceGenome:RGD:1560566
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560566
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM219 (transmembrane protein 219). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 132.1), Kidney (RPKM 67.2) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tmem219 in Genome Data Viewer
    Location:
    1q36-q37
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (190926722..190965044, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (181496195..181509259, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene HIRA interacting protein 3 Neighboring gene TAO kinase 2 Neighboring gene uncharacterized LOC108349643 Neighboring gene potassium channel tetramerization domain containing 13 Neighboring gene aspartate beta-hydroxylase domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    insulin-like growth factor-binding protein 3 receptor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400628.1 → NP_001387557.1  insulin-like growth factor-binding protein 3 receptor isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AG17, A6I9I5
      Related
      ENSRNOP00000091662.2, ENSRNOT00000106056.2

    2. NM_001400629.1 → NP_001387558.1  insulin-like growth factor-binding protein 3 receptor isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AG17, A6I9I5

    3. NM_001400630.1 → NP_001387559.1  insulin-like growth factor-binding protein 3 receptor isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5
      Related
      ENSRNOP00000094366.1, ENSRNOT00000101870.2

    4. NM_001400631.1 → NP_001387560.1  insulin-like growth factor-binding protein 3 receptor isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6I9I4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      190926722..190965044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263306.1 → XP_063119376.1  insulin-like growth factor-binding protein 3 receptor isoform X4

      UniProtKB/TrEMBL
      A6I9I4

    2. XM_063263304.1 → XP_063119374.1  insulin-like growth factor-binding protein 3 receptor isoform X4

      UniProtKB/TrEMBL
      A6I9I4

    3. XM_063263297.1 → XP_063119367.1  insulin-like growth factor-binding protein 3 receptor isoform X4

      UniProtKB/TrEMBL
      A6I9I4

    4. XM_063263271.1 → XP_063119341.1  insulin-like growth factor-binding protein 3 receptor isoform X3

      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5

    5. XM_063263265.1 → XP_063119335.1  insulin-like growth factor-binding protein 3 receptor isoform X3

      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5

    6. XM_063263273.1 → XP_063119343.1  insulin-like growth factor-binding protein 3 receptor isoform X3

      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5

    7. XM_063263279.1 → XP_063119349.1  insulin-like growth factor-binding protein 3 receptor isoform X3

      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5

    8. XM_063263289.1 → XP_063119359.1  insulin-like growth factor-binding protein 3 receptor isoform X3

      UniProtKB/TrEMBL
      A0A8I6AG17, A0A8I6AHK8, A6I9I3, A6I9I5

    9. XM_063263261.1 → XP_063119331.1  insulin-like growth factor-binding protein 3 receptor isoform X1

      UniProtKB/TrEMBL
      A0A8I6AG17, A6I9I5

    10. XM_063263263.1 → XP_063119333.1  insulin-like growth factor-binding protein 3 receptor isoform X2

      UniProtKB/TrEMBL
      A0A8I6AG17, A6I9I5

    11. XM_063263309.1 → XP_063119379.1  insulin-like growth factor-binding protein 3 receptor isoform X5

    12. XM_063263315.1 → XP_063119385.1  insulin-like growth factor-binding protein 3 receptor isoform X7

      UniProtKB/TrEMBL
      B2GV90, D3ZPT4

    13. XM_063263312.1 → XP_063119382.1  insulin-like growth factor-binding protein 3 receptor isoform X6

      Related
      ENSRNOP00000027094.7, ENSRNOT00000027094.8
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools