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    Sval2 seminal vesicle antigen-like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 84605, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sval2provided by RGD
    Official Full Name
    seminal vesicle antigen-like 2provided by RGD
    Primary source
    RGD:620869
    See related
    EnsemblRapid:ENSRNOG00000025541 AllianceGenome:RGD:620869
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    SLP-M
    Summary
    Predicted to enable aspartic-type endopeptidase activity. Predicted to be involved in proteolysis and regulation of immune system process. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Sval2 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (71776004..71779968)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (70809366..70813330)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (71340674..71344638)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene denticleless E3 ubiquitin protein ligase, pseudogene 1 Neighboring gene prolactin induced protein Neighboring gene seminal vesicle antigen-like 1 Neighboring gene taste receptor, type 2, member 139

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in proteolysis  
    involved_in regulation of immune system process  
    Component Evidence Code Pubs
    is_active_in extracellular space  

    General protein information

    Preferred Names
    seminal vesicle antigen-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133291.1 → NP_579825.1  seminal vesicle antigen-like 2 precursor

      See identical proteins and their annotated locations for NP_579825.1

      Status: PROVISIONAL

      Source sequence(s)
      AB051831
      UniProtKB/TrEMBL
      A6IF59, F7FPH3, Q99N74
      Related
      ENSRNOP00000021668.1, ENSRNOT00000021986.4
      Conserved Domains (1) summary
      pfam05326
      Location:3 → 124
      SVA; Seminal vesicle autoantigen (SVA)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      71776004..71779968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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