Wdr90 WD repeat domain 90 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Wdr90provided by RGD
Official Full Name: WD repeat domain 90provided by RGD
Primary source: RGD:7520481
See related: EnsemblRapid:ENSRNOG00000020006 AllianceGenome:RGD:7520481
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1561785
Summary: Predicted to be involved in cilium assembly. Predicted to be located in centrosome. Predicted to be active in centriole. Orthologous to human WDR90 (WD repeat domain 90). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 47.6), Thymus (RPKM 38.2) and 9 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 10q12

Exon count:: 41

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (15369184..15385797, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (14864672..14881285, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (15211660..15229477, complement)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in cilium assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in centriole	IBA Inferred from Biological aspect of Ancestor more info
located_in centriole	ISO Inferred from Sequence Orthology more info
located_in centrosome	IEA Inferred from Electronic Annotation more info
located_in centrosome	ISO Inferred from Sequence Orthology more info

General protein information

Go to the top of the page Help

Preferred Names: WD repeat domain 90; WD repeat-containing protein 90

Names: WD repeat-containing protein 90-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001433408.1 → NP_001420337.1 WD repeat domain 90

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

UniProtKB/TrEMBL

A0A8I5ZMK6, D3ZMM2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086028.1 Reference GRCr8

Range

15369184..15385797 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006246068.4 → XP_006246130.1 WD repeat-containing protein 90 isoform X2

Related

ENSRNOT00000027121.8

Conserved Domains (4) summary

COG2319
Location:1256 → 1679

WD40; WD40 repeat [General function prediction only]

pfam05018
Location:60 → 236

DUF667; Protein of unknown function (DUF667)

sd00039
Location:1285 → 1327

7WD40; WD40 repeat [structural motif]

cl02567
Location:758 → 1058

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_006246066.4 → XP_006246128.1 WD repeat-containing protein 90 isoform X1

UniProtKB/TrEMBL

A0A8I5ZMK6

Conserved Domains (4) summary

COG2319
Location:1256 → 1679

WD40; WD40 repeat [General function prediction only]

pfam05018
Location:60 → 236

DUF667; Protein of unknown function (DUF667)

sd00039
Location:1285 → 1327

7WD40; WD40 repeat [structural motif]

cl02567
Location:758 → 1058

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039087116.1 → XP_038943044.1 WD repeat-containing protein 90 isoform X3

Conserved Domains (3) summary

COG2319
Location:732 → 1155

WD40; WD40 repeat [General function prediction only]

sd00039
Location:761 → 803

7WD40; WD40 repeat [structural motif]

cl29593
Location:234 → 534

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_063270092.1 → XP_063126162.1 WD repeat-containing protein 90 isoform X4