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    Cmtm2a CKLF-like MARVEL transmembrane domain containing 2A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307616, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cmtm2aprovided by RGD
    Official Full Name
    CKLF-like MARVEL transmembrane domain containing 2Aprovided by RGD
    Primary source
    RGD:1307501
    See related
    EnsemblRapid:ENSRNOG00000025420 AllianceGenome:RGD:1307501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cklfsf1
    Summary
    Predicted to be active in membrane. Orthologous to human CMTM2 (CKLF like MARVEL transmembrane domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 3632.0) See more
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    Genomic context

    See Cmtm2a in Genome Data Viewer
    Location:
    19p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (678154..685274)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (671719..678839)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (880024..887144)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 3 Neighboring gene CKLF-like MARVEL transmembrane domain containing 2B Neighboring gene CKLF-like MARVEL transmembrane domain containing 1 Neighboring gene C-terminal binding protein 2, pseudogene 2 Neighboring gene chemokine-like factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in membrane  

    General protein information

    Preferred Names
    CKLF-like MARVEL transmembrane domain-containing protein 2A
    Names
    chemokine-like factor super family 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013142.1NP_001013160.1  CKLF-like MARVEL transmembrane domain-containing protein 2A

      See identical proteins and their annotated locations for NP_001013160.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078975
      UniProtKB/TrEMBL
      Q6AYN6
      Related
      ENSRNOP00000058363.2, ENSRNOT00000061648.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      678154..685274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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