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    Pincl pregnancy induced noncoding RNA like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287004, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Pinclprovided by RGD
    Official Full Name
    pregnancy induced noncoding RNA likeprovided by RGD
    Primary source
    RGD:727910
    See related
    AllianceGenome:RGD:727910
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    GB.7; Pinc
    Expression
    Biased expression in Muscle (RPKM 1.6), Testes (RPKM 1.2) and 7 other tissues See more
    Orthologs
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    Genomic context

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    See Pincl in Genome Data Viewer
    Location:
    9q33
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (82432041..82448952, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (74982849..74999760, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (80680445..80697356, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480294 Neighboring gene uncharacterized LOC120094706 Neighboring gene uncharacterized LOC108351950 Neighboring gene uncharacterized LOC108351952 Neighboring gene lactate dehydrogenase B pseudogene Neighboring gene uncharacterized LOC120094708

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A noncoding RNA is a potential marker of cell fate during mammary gland development. Ginger MR, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16574773, Free PMC Article
    2. Persistent changes in gene expression induced by estrogen and progesterone in the rat mammary gland. Ginger MR, et al. Mol Endocrinol, 2001 Nov. PMID 11682629

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Other Names

    • Mg1 protein
    • Pregnancy induced noncoding RNA transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110636.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, also known as PINC A) represents the longest transcript.
      Source sequence(s)
      JAXUCZ010000009

    2. NR_110637.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2, also known as PINC G) differs in the 5' exon structure and has an alternate polyA site in the 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      DQ080211

    3. NR_110638.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3, also known as PINC F) lacks an internal exon and uses alternate splice sites in the 3' region, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      JAXUCZ010000009

    4. NR_110639.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4, also known as PINC D) lacks two internal exons and has an alternate 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      JAXUCZ010000009

    5. NR_110640.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5, also known as PINC B) lacks an internal exon and uses alternate splice sites in the 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      JAXUCZ010000009

    6. NR_110641.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6, also known as PINC C) has an alternate 5' exon structure and uses alternate splice sites in the 3' region, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      JAXUCZ010000009

    7. NR_110642.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7, also known as PINC E) has an alternate 5' exon structure and an alternate polyA site in the 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      JAXUCZ010000009

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      82432041..82448952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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