U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zcchc14 zinc finger CCHC-type containing 14 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365018, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Zcchc14provided by RGD
    Official Full Name
    zinc finger CCHC-type containing 14provided by RGD
    Primary source
    RGD:1309494
    See related
    EnsemblRapid:ENSRNOG00000018226 AllianceGenome:RGD:1309494
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309494
    Summary
    Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC14 (zinc finger CCHC-type containing 14). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 118.6), Lung (RPKM 116.3) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zcchc14 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (66582800..66627136, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (49674185..49718004, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (53644500..53688624, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) 13 Neighboring gene microtubule-associated protein 1 light chain 3 beta Neighboring gene uncharacterized LOC134483656 Neighboring gene uncharacterized LOC102550418 Neighboring gene small nucleolar RNA SNORA72

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger CCHC domain-containing protein 14
    Names
    zinc finger, CCHC domain containing 14

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427306.1 → NP_001414235.1  zinc finger CCHC domain-containing protein 14

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      M0R4K3
      Related
      ENSRNOP00000064290.2, ENSRNOT00000074448.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      66582800..66627136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098193.1 → XP_038954121.1  zinc finger CCHC domain-containing protein 14 isoform X2

      Related
      ENSRNOP00000105060.1, ENSRNOT00000153213.1
      Conserved Domains (2) summary
      cd09558
      Location:413 → 477
      SAM_ZCCH14; SAM domain of ZCCH14 subfamily
      smart00343
      Location:1022 → 1037
      ZnF_C2HC; zinc finger

    2. XM_006255732.3 → XP_006255794.1  zinc finger CCHC domain-containing protein 14 isoform X1

      Conserved Domains (4) summary
      cd09558
      Location:437 → 501
      SAM_ZCCH14; SAM domain of ZCCH14 subfamily
      smart00454
      Location:444 → 495
      SAM; Sterile alpha motif
      pfam00098
      Location:1046 → 1061
      zf-CCHC; Zinc knuckle
      cl02563
      Location:261 → 342
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools