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    Tmem82 transmembrane protein 82 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298605, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem82provided by RGD
    Official Full Name
    transmembrane protein 82provided by RGD
    Primary source
    RGD:1566169
    See related
    EnsemblRapid:ENSRNOG00000071385 AllianceGenome:RGD:1566169
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566169
    Summary
    Orthologous to human TMEM82 (transmembrane protein 82). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 50.6), Heart (RPKM 39.7) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Tmem82 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (159210531..159214462, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (153927486..153931942, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (160170617..160175118, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene spen family transcriptional repressor Neighboring gene filamin binding LIM protein 1 Neighboring gene uncharacterized LOC134487029 Neighboring gene solute carrier family 25, member 34 Neighboring gene pleckstrin homology and RUN domain containing M2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431160.1NP_001418089.1  transmembrane protein 82

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6ITU5, D4A8K4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      159210531..159214462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_238429.11XP_238429.5  transmembrane protein 82 isoform X4

      Conserved Domains (1) summary
      pfam15816
      Location:18312
      TMEM82; Transmembrane protein 82
    2. XM_006239327.5XP_006239389.1  transmembrane protein 82 isoform X3

      See identical proteins and their annotated locations for XP_006239389.1

      Related
      ENSRNOP00000099030.1, ENSRNOT00000137123.1
      Conserved Domains (1) summary
      pfam15816
      Location:18312
      TMEM82; Transmembrane protein 82
    3. XM_008764306.4XP_008762528.1  transmembrane protein 82 isoform X2

      See identical proteins and their annotated locations for XP_008762528.1

      Related
      ENSRNOP00000103585.1, ENSRNOT00000169818.1
      Conserved Domains (1) summary
      pfam15816
      Location:18359
      TMEM82; Transmembrane protein 82
    4. XM_008764305.4XP_008762527.1  transmembrane protein 82 isoform X1

      See identical proteins and their annotated locations for XP_008762527.1

      Conserved Domains (1) summary
      pfam15816
      Location:18359
      TMEM82; Transmembrane protein 82