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    Tmem222 transmembrane protein 222 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313021, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tmem222provided by RGD
    Official Full Name
    transmembrane protein 222provided by RGD
    Primary source
    RGD:1304793
    See related
    EnsemblRapid:ENSRNOG00000008564 AllianceGenome:RGD:1304793
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304793
    Summary
    Predicted to be located in dendrite. Orthologous to human TMEM222 (transmembrane protein 222). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 92.1), Brain (RPKM 90.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem222 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (150749746..150763031, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (145465847..145477932, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (151461961..151473750, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene synaptotagmin-like 1 Neighboring gene uncharacterized LOC134487005 Neighboring gene WD and tetratricopeptide repeats 1 Neighboring gene uncharacterized LOC134487006 Neighboring gene solute carrier family 9 member A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 222

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113780.1 → NP_001107252.1  transmembrane protein 222

      See identical proteins and their annotated locations for NP_001107252.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158875
      UniProtKB/TrEMBL
      A6ISW3, B0BNM0
      Related
      ENSRNOP00000011357.6, ENSRNOT00000011357.7
      Conserved Domains (1) summary
      pfam05608
      Location:61 → 178
      DUF778; Protein of unknown function (DUF778)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      150749746..150763031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109776.2 → XP_038965704.1  transmembrane protein 222 isoform X1

      Conserved Domains (1) summary
      pfam05608
      Location:115 → 147
      DUF778; Protein of unknown function (DUF778)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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