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    Tmem132c transmembrane protein 132C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363915, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tmem132cprovided by RGD
    Official Full Name
    transmembrane protein 132Cprovided by RGD
    Primary source
    RGD:1583824
    See related
    EnsemblRapid:ENSRNOG00000000963 AllianceGenome:RGD:1583824
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305669
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM132C (transmembrane protein 132C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 37.4), Uterus (RPKM 20.0) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem132c in Genome Data Viewer
    Location:
    12q14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (34752362..35073821, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (29115213..29437900, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (32806372..33130746, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481183 Neighboring gene glycosyltransferase 1 domain containing 1 Neighboring gene solute carrier family 15 member 4 Neighboring gene uncharacterized LOC108352443 Neighboring gene transmembrane protein 254, pseudogene 1 Neighboring gene uncharacterized LOC120095946 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 132C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431836.1 → NP_001418765.1  transmembrane protein 132C

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A6J0U6, F1LYB3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      34752362..35073821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002727968.7 → XP_002728014.2  transmembrane protein 132C isoform X1

      Related
      ENSRNOP00000041215.6, ENSRNOT00000048474.7
      Conserved Domains (3) summary
      pfam15705
      Location:58 → 187
      TMEM132D_N; Mature oligodendrocyte transmembrane protein, TMEM132D, N-term
      pfam15706
      Location:893 → 981
      TMEM132D_C; Mature oligodendrocyte transmembrane protein, TMEM132D, C-term
      pfam16070
      Location:444 → 786
      TMEM132; Transmembrane protein family 132

    2. XM_039090106.2 → XP_038946034.1  transmembrane protein 132C isoform X2

      Conserved Domains (2) summary
      pfam15705
      Location:58 → 187
      TMEM132D_N; Mature oligodendrocyte transmembrane protein, TMEM132D, N-term
      pfam16070
      Location:444 → 721
      TMEM132; Transmembrane protein family 132
    Nucleotide Protein Strain
    Heading Accession and Version

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