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    LOC100910554 histone H2A type 1-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910554, updated on 9-Dec-2024

    Summary

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    Symbol
    LOC100910554provided by RGD
    Full Name
    histone H2A type 1-likeprovided by RGD
    Primary source
    RGD:6497956
    See related
    AllianceGenome:RGD:6497956
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AC4 (H2A clustered histone 4) and H2AC8 (H2A clustered histone 8). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See LOC100910554 in Genome Data Viewer
    Location:
    17p11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (47392512..47393171)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (42696845..42697423)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (44738552..44739195)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) 11 Neighboring gene histone cluster 1, H2bc Neighboring gene histone cluster 1, H4m Neighboring gene histone cluster 1, H2ao

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in heterochromatin formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    histone H2A type 1-B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      47392512..47393171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003751711.6 → XP_003751759.1  histone H2A type 1-B-like

      See identical proteins and their annotated locations for XP_003751759.1

      UniProtKB/Swiss-Prot
      Q64598
      UniProtKB/TrEMBL
      A0A8I6ARS7
      Conserved Domains (2) summary
      PTZ00017
      Location:1 → 130
      PTZ00017; histone H2A; Provisional
      cd00074
      Location:6 → 120
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    Nucleotide Protein Strain
    Heading Accession and Version

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