U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rrp15 ribosomal RNA processing 15 homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360895, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rrp15provided by RGD
    Official Full Name
    ribosomal RNA processing 15 homologprovided by RGD
    Primary source
    RGD:1306106
    See related
    EnsemblRapid:ENSRNOG00000002450 AllianceGenome:RGD:1306106
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306106
    Summary
    Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Orthologous to human RRP15 (ribosomal RNA processing 15 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 65.1), Muscle (RPKM 57.8) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rrp15 in Genome Data Viewer
    Location:
    13q26
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (100807729..100830812, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (98276276..98299357, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (105155824..105178907, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096341 Neighboring gene transforming growth factor, beta 2 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene uncharacterized LOC103692378 Neighboring gene uncharacterized LOC103692383

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC105708

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    RRP15-like protein
    Names
    ribosomal RNA-processing protein 15

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009702.1NP_001009702.1  RRP15-like protein

      See identical proteins and their annotated locations for NP_001009702.1

      Status: VALIDATED

      Source sequence(s)
      BC087649
      UniProtKB/Swiss-Prot
      Q5M947
      UniProtKB/TrEMBL
      A6JGS7
      Related
      ENSRNOP00000003359.4, ENSRNOT00000003359.8
      Conserved Domains (1) summary
      pfam07890
      Location:101215
      Rrp15p

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      100807729..100830812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)