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    Rimkla ribosomal modification protein rimK-like family member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313553, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rimklaprovided by RGD
    Official Full Name
    ribosomal modification protein rimK-like family member Aprovided by RGD
    Primary source
    RGD:1306880
    See related
    EnsemblRapid:ENSRNOG00000008625 AllianceGenome:RGD:1306880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306880
    Summary
    Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity. Predicted to be involved in protein modification process. Predicted to be located in cytoplasm. Orthologous to human RIMKLA (ribosomal modification protein rimK like family member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 71.3), Heart (RPKM 15.8) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rimkla in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138357463..138384132, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (133072179..133098840, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138518559..138545577, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger, MYND-type containing 12 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene forkhead box J3 Neighboring gene ribosomal protein S27a, pseudogene 1 Neighboring gene ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular identification of N-acetylaspartylglutamate synthase and beta-citrylglutamate synthase. Collard F, et al. J Biol Chem, 2010 Sep 24. PMID 20657015, Free PMC Article
    2. N-acetylaspartylglutamate synthetase II synthesizes N-acetylaspartylglutamylglutamate. Lodder-Gadaczek J, et al. J Biol Chem, 2011 May 13. PMID 21454531, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A
    Names
    N-acetylaspartylglutamate synthase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138357463..138384132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056985553.2 → XP_056841533.1  LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A

      UniProtKB/TrEMBL
      A6JZP4, D4A7C3
      Related
      ENSRNOP00000011586.5, ENSRNOT00000011586.8
    Nucleotide Protein Strain
    Heading Accession and Version

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    Chemical Information
    Molecular Biology Databases
    Research Materials