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    Stpg3 sperm-tail PG-rich repeat containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499746, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Stpg3provided by RGD
    Official Full Name
    sperm-tail PG-rich repeat containing 3provided by RGD
    Primary source
    RGD:1561978
    See related
    EnsemblRapid:ENSRNOG00000010002 AllianceGenome:RGD:1561978
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in cytoskeleton. Orthologous to human STPG3 (sperm-tail PG-rich repeat containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 57.8) and Brain (RPKM 3.2) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Stpg3 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28426283..28432857, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8028122..8030546, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2431757..2434258, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23-like Neighboring gene torsin family 4, member A Neighboring gene negative elongation factor complex member B Neighboring gene RNA, U6 small nuclear 136 Neighboring gene ciliary microtubule inner protein 2A Neighboring gene uncharacterized LOC120101506 Neighboring gene tubulin, beta 4B class IVb Neighboring gene solute carrier family 34 member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein STPG3
    Names
    uncharacterized protein C9orf173 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399436.1 → NP_001386365.1  protein STPG3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6JT14, D3ZRE5, Q498T7
      Related
      ENSRNOP00000013278.4, ENSRNOT00000013278.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28426283..28432857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284338.1 → XP_063140408.1  protein STPG3 isoform X3

      UniProtKB/TrEMBL
      A6JT14, D3ZRE5, Q498T7

    2. XM_063284337.1 → XP_063140407.1  protein STPG3 isoform X1

      UniProtKB/TrEMBL
      Q498T7

    3. XM_006233650.5 → XP_006233712.1  protein STPG3 isoform X4

      See identical proteins and their annotated locations for XP_006233712.1

      UniProtKB/TrEMBL
      Q498T7

    4. XM_039106114.2 → XP_038962042.1  protein STPG3 isoform X2

      UniProtKB/TrEMBL
      Q498T7

    RNA

    1. XR_005502049.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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