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    Pabir2 PABIR family member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501647, updated on 9-Dec-2024

    Summary

    Symbol
    Pabir2provided by RGD
    Full Name
    PABIR family member 2provided by RGD
    Primary source
    RGD:1560129
    See related
    EnsemblRapid:ENSRNOG00000002285 AllianceGenome:RGD:1560129
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam122b; RGD1560129
    Summary
    Predicted to enable protein serine/threonine phosphatase inhibitor activity. Orthologous to human PABIR2 (PABIR family member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 79.2), Lung (RPKM 40.4) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pabir2 in Genome Data Viewer
    Location:
    Xq36
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (137908653..137935153, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (132989124..133015625, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (157853453..157879939)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550366 Neighboring gene microRNA 322 Neighboring gene placenta enriched 1 Neighboring gene PABIR family member 3 Neighboring gene motile sperm domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    PABIR family member 2
    Names
    family with sequence similarity 122B
    protein FAM122B
    protein FAM122B-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166586.1NP_001160058.1  PABIR family member 2

      See identical proteins and their annotated locations for NP_001160058.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A0G2JVV0
      Related
      ENSRNOP00000069628.2, ENSRNOT00000089777.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      137908653..137935153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099984.2XP_038955912.1  PABIR family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVV0
      Related
      ENSRNOP00000060417.5, ENSRNOT00000066874.5
    2. XM_039099989.2XP_038955917.1  PABIR family member 2 isoform X8

      UniProtKB/TrEMBL
      A0A0G2QBZ6
    3. XM_039099985.2XP_038955913.1  PABIR family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JVV0
    4. XM_039099987.2XP_038955915.1  PABIR family member 2 isoform X5

      UniProtKB/TrEMBL
      A0A0G2QBZ6
    5. XM_039099986.2XP_038955914.1  PABIR family member 2 isoform X4

      UniProtKB/TrEMBL
      A0A0G2QBZ6
    6. XM_006257648.4XP_006257710.1  PABIR family member 2 isoform X7

      See identical proteins and their annotated locations for XP_006257710.1

      UniProtKB/TrEMBL
      A0A0G2QBZ6
    7. XM_006257643.5XP_006257705.1  PABIR family member 2 isoform X3

      See identical proteins and their annotated locations for XP_006257705.1

      UniProtKB/TrEMBL
      A0A0G2JVV0, A6KUJ4
      Related
      ENSRNOP00000106793.1, ENSRNOT00000139220.1
    8. XM_008773633.3XP_008771855.1  PABIR family member 2 isoform X6

      See identical proteins and their annotated locations for XP_008771855.1

      UniProtKB/TrEMBL
      A0A0G2QBZ6
    9. XM_039099988.1XP_038955916.1  PABIR family member 2 isoform X8

      UniProtKB/TrEMBL
      A0A0G2QBZ6
      Related
      ENSRNOP00000107407.1, ENSRNOT00000164346.1