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    LOC366310 pseudogene for small nuclear RNA U3 (H3.9) [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366310, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC366310provided by RGD
    Full Name
    pseudogene for small nuclear RNA U3 (H3.9)provided by RGD
    Primary source
    RGD:1586092
    See related
    AllianceGenome:RGD:1586092
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
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    Genomic context

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    See LOC366310 in Genome Data Viewer
    Location:
    5q13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (26862392..26862516, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (22065018..22065142, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (22023004..22023125, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102552020 Neighboring gene uncharacterized LOC134478933 Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene proteasome 26S subunit, non-ATPase 1, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Substitutions, insertions, and deletions in two highly conserved U3 RNA species. Reddy R, et al. J Biol Chem, 1980 Jul 25. PMID 6771280
    2. Small nuclear RNAs and RNA processing. Reddy R, et al. Prog Nucleic Acid Res Mol Biol, 1983. PMID 6198692
    3. Isolation and characterization of three rat U3 RNA pseudogenes colinear with U3 RNA. Reddy R, et al. J Biol Chem, 1985 May 10. PMID 2580837
    4. Genes and pseudogenes for rat U3A and U3B small nuclear RNA. Stroke IL, et al. J Mol Biol, 1985 Jul 20. PMID 2411940
    5. Nucleotide sequence of nucleolar U3B RNA. Reddy R, et al. J Biol Chem, 1979 Nov 10. PMID 500626

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_005130.1 

      Range
      1..125
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      26862392..26862516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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