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    Msantd5 Myb/SANT DNA binding domain containing 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497899, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Msantd5provided by RGD
    Official Full Name
    Myb/SANT DNA binding domain containing 5provided by RGD
    Primary source
    RGD:1561674
    See related
    EnsemblRapid:ENSRNOG00000022555 AllianceGenome:RGD:1561674
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human MSANTD5 (Myb/SANT DNA binding domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 328.6), Liver (RPKM 40.9) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Msantd5 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (36017911..36026389, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (35516926..35526742, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (36709018..36717989, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene Myb/SANT DNA binding domain containing 5 like 1 Neighboring gene putative uncharacterized protein MSANTD5 Neighboring gene CDC-like kinase 4 Neighboring gene collagen type XXIII alpha 1 chain Neighboring gene uncharacterized LOC120095095 Neighboring gene uncharacterized LOC134480786

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Myb/SANT DNA binding domain containing 5; myb/SANT DNA binding domain containing 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017472.1 → NP_001017472.1  Myb/SANT DNA binding domain containing 5

      See identical proteins and their annotated locations for NP_001017472.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079296
      UniProtKB/TrEMBL
      A6HE45, Q6AXV8
      Related
      ENSRNOP00000034675.4, ENSRNOT00000038838.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      36017911..36026389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269604.1 → XP_063125674.1  myb/SANT DNA binding domain containing 5 isoform X1

      UniProtKB/TrEMBL
      A6HE45

    2. XM_063269607.1 → XP_063125677.1  myb/SANT DNA binding domain containing 5 isoform X2

      UniProtKB/TrEMBL
      A6HE45, F7F237

    3. XM_039086559.2 → XP_038942487.1  myb/SANT DNA binding domain containing 5 isoform X3

      UniProtKB/TrEMBL
      A6HE45, Q6AXV8

    4. XM_063269606.1 → XP_063125676.1  myb/SANT DNA binding domain containing 5 isoform X2

      UniProtKB/TrEMBL
      A6HE45, F7F237

    5. XM_006246312.3 → XP_006246374.1  myb/SANT DNA binding domain containing 5 isoform X1

      See identical proteins and their annotated locations for XP_006246374.1

      UniProtKB/TrEMBL
      A6HE45
    Nucleotide Protein Strain
    Heading Accession and Version

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