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    Slc9a2 solute carrier family 9 member A2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24783, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slc9a2provided by RGD
    Official Full Name
    solute carrier family 9 member A2provided by RGD
    Primary source
    RGD:3719
    See related
    EnsemblRapid:ENSRNOG00000015567 AllianceGenome:RGD:3719
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Nhe2
    Summary
    Enables sodium:proton antiporter activity. Involved in sodium ion transmembrane transport. Predicted to be located in apical plasma membrane. Predicted to be active in plasma membrane. Orthologous to human SLC9A2 (solute carrier family 9 member A2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 39.0), Muscle (RPKM 38.7) and 4 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Slc9a2 in Genome Data Viewer
    Location:
    9q22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (50427612..50510043)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (42932001..43014447)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (47386581..47491813)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A4 Neighboring gene uncharacterized LOC134480287 Neighboring gene uncharacterized LOC103690525 Neighboring gene major facilitator superfamily domain containing 9 Neighboring gene transmembrane protein 182

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables potassium:proton antiporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables sodium:proton antiporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables sodium:proton antiporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables sodium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables sodium:proton antiporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in epithelial cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in potassium ion transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within protein localization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of intracellular pH IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of intracellular pH ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of pH IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of pH ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sodium ion import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sodium ion transmembrane transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within sodium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in apical plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in apical plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    sodium/hydrogen exchanger 2
    Names
    H7
    NHE-2
    Na(+)/H(+) exchanger 2
    Na/H ion exchanger
    Solute carrier family 9 (sodium/hydrogen exchanger 2), antiporter 2, Na+/H+ (Na+/H+ exchanger 2)
    solute carrier family 9 (sodium/hydrogen exchanger), member 2
    solute carrier family 9 member 2
    solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113335.1NP_001106806.1  sodium/hydrogen exchanger 2 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001106806.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      BE117286, L11004, L11236
      UniProtKB/Swiss-Prot
      P48763, Q16434
      UniProtKB/TrEMBL
      A0A8I6A8M9, A6INP3
      Related
      ENSRNOP00000021270.4, ENSRNOT00000021270.8
      Conserved Domains (3) summary
      TIGR00840
      Location:75631
      b_cpa1; sodium/hydrogen exchanger 3
      pfam00999
      Location:85485
      Na_H_Exchanger; Sodium/hydrogen exchanger family
      pfam16644
      Location:579685
      NEXCaM_BD; Regulatory region of Na+/H+ exchanger NHE binds to calmodulin
    2. NM_012653.2NP_036785.2  sodium/hydrogen exchanger 2 isoform 2

      See identical proteins and their annotated locations for NP_036785.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks the 5' exon and has an alternate 5' segment, as compared to variant 1. The resulting isoform (2) has a shorter N-terminus, as compared to isoform 1.
      Source sequence(s)
      BE117286, L11004, L11236
      UniProtKB/TrEMBL
      A0A8I6A8M9, A6INP4
      Related
      ENSRNOP00000088725.1, ENSRNOT00000096863.2
      Conserved Domains (1) summary
      TIGR00840
      Location:1515
      b_cpa1; sodium/hydrogen exchanger 3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      50427612..50510043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)