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    Olfml2a olfactomedin-like 2A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296708, updated on 9-Dec-2024

    Summary

    Official Symbol
    Olfml2aprovided by RGD
    Official Full Name
    olfactomedin-like 2Aprovided by RGD
    Primary source
    RGD:1311651
    See related
    EnsemblRapid:ENSRNOG00000014034 AllianceGenome:RGD:1311651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable extracellular matrix binding activity and identical protein binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human OLFML2A (olfactomedin like 2A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 308.1), Adrenal (RPKM 69.0) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Olfml2a in Genome Data Viewer
    Location:
    3q12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (43098299..43127621)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (22688590..22717917)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (23223468..23259318)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 6, group A, member 1 Neighboring gene uncharacterized LOC120101539 Neighboring gene microRNA 181a-2 Neighboring gene microRNA 181b-2 Neighboring gene golgin A2 like 2 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene WD repeat domain 38 Neighboring gene ribosomal protein L35

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular matrix  
    is_active_in extracellular space  

    General protein information

    Preferred Names
    olfactomedin-like protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106572.2 → NP_001100042.2  olfactomedin-like protein 2A precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6JEV4, D3ZMR0
      Related
      ENSRNOP00000018852.7, ENSRNOT00000018853.9
      Conserved Domains (1) summary
      pfam02191
      Location:412 → 661
      OLF; Olfactomedin-like domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      43098299..43127621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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