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    Arln allregulin [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691807, updated on 9-Dec-2024

    Summary

    Official Symbol
    Arlnprovided by RGD
    Official Full Name
    allregulinprovided by RGD
    Primary source
    RGD:1594660
    See related
    EnsemblRapid:ENSRNOG00000014654 AllianceGenome:RGD:1594660
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    C2h4orf3
    Summary
    Predicted to act upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human C4orf3 (chromosome 4 open reading frame 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 330.3), Lung (RPKM 293.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Arln in Genome Data Viewer
    Location:
    2q42
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (213740519..213742279)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (211055925..211057685)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (227095487..227097247)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 5A Neighboring gene uncharacterized LOC102550474 Neighboring gene fatty acid binding protein 2 Neighboring gene ubiquitin specific peptidase 53 Neighboring gene myozenin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC112638

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane  

    General protein information

    Preferred Names
    uncharacterized protein C4orf3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271116.1NP_001258045.1  uncharacterized protein C4orf3 homolog

      See identical proteins and their annotated locations for NP_001258045.1

      Status: PROVISIONAL

      Source sequence(s)
      BC100074
      UniProtKB/Swiss-Prot
      Q498U0
      UniProtKB/TrEMBL
      A6HVH5
      Related
      ENSRNOP00000019647.2, ENSRNOT00000019647.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      213740519..213742279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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