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    Spmip4 sperm microtubule inner protein 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500124, updated on 9-Dec-2024

    Summary

    Official Symbol
    Spmip4provided by RGD
    Official Full Name
    sperm microtubule inner protein 4provided by RGD
    Primary source
    RGD:1563788
    See related
    EnsemblRapid:ENSRNOG00000010594 AllianceGenome:RGD:1563788
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasm and motile cilium. Predicted to be active in centrosome. Orthologous to human SPMIP4 (sperm microtubule inner protein 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 490.0) and Uterus (RPKM 27.2) See more
    Orthologs
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    Genomic context

    See Spmip4 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (80994146..81019062, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (79663375..79688291, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (80342705..80367606, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27A like 5 Neighboring gene uncharacterized LOC102546410 Neighboring gene cytochrome c, somatic Neighboring gene neuropeptide VF precursor Neighboring gene uncharacterized LOC108350707

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in centrosome  
    located_in centrosome  
    located_in centrosome  
    located_in centrosome  
    located_in cytoplasm  
    located_in motile cilium  

    General protein information

    Preferred Names
    sperm-associated microtubule inner protein 4
    Names
    sperm associated microtubule inner protein 4
    uncharacterized protein C7orf31 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024329.2NP_001019500.1  sperm-associated microtubule inner protein 4

      See identical proteins and their annotated locations for NP_001019500.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q6AYM0
      UniProtKB/TrEMBL
      A0A8L2Q7D6, A6K0M3
      Related
      ENSRNOP00000014331.5, ENSRNOT00000014331.6
      Conserved Domains (1) summary
      pfam15093
      Location:1283
      DUF4555; Domain of unknown function (DUF4555)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      80994146..81019062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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