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    Ccdc110 coiled-coil domain containing 110 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290755, updated on 4-Jan-2025

    Summary

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    Symbol
    Ccdc110provided by RGD
    Full Name
    coiled-coil domain containing 110provided by RGD
    Primary source
    RGD:1564538
    See related
    EnsemblRapid:ENSRNOG00000045697 AllianceGenome:RGD:1564538
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564538
    Summary
    Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoskeleton. Orthologous to human CCDC110 (coiled-coil domain containing 110). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Restricted expression toward (RPKM 149.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc110 in Genome Data Viewer
    Location:
    16q11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (53048305..53069606, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (46315745..46337050, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (49509885..49522094, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) Unplaced Scaffold NW_007906784.1 (23527..26141, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene Lrp2 binding protein Neighboring gene ankyrin repeat domain 37 Neighboring gene UFM1-specific peptidase 2 Neighboring gene cilia and flagella associated protein 96 Neighboring gene PDZ and LIM domain 3 Neighboring gene U6atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC188094

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 110
    Names
    coiled-coil domain-containing protein 110-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432793.1 → NP_001419722.1  coiled-coil domain-containing protein 110

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A0G2JXF8, A0A8I6AFM1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      53048305..53069606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039094895.2 → XP_038950823.1  coiled-coil domain-containing protein 110 isoform X2

      Related
      ENSRNOP00000070254.2, ENSRNOT00000081642.3
      Conserved Domains (1) summary
      COG1196
      Location:507 → 818
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_039094894.2 → XP_038950822.1  coiled-coil domain-containing protein 110 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A3X1, A0A8I6AFM1
      Related
      ENSRNOP00000085692.2, ENSRNOT00000116429.2
      Conserved Domains (1) summary
      COG1196
      Location:507 → 818
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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