U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slc16a9 solute carrier family 16, member 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 687808, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    Slc16a9provided by RGD
    Full Name
    solute carrier family 16, member 9provided by RGD
    Primary source
    RGD:1596295
    See related
    EnsemblRapid:ENSRNOG00000049063 AllianceGenome:RGD:1596295
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    MCT 9; AABR07044759.1
    Summary
    Enables creatine transmembrane transporter activity. Involved in creatine transmembrane transport. Located in plasma membrane. Orthologous to human SLC16A9 (solute carrier family 16 member 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 212.8), Lung (RPKM 65.9) and 7 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Slc16a9 in Genome Data Viewer
    Location:
    20p11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (18334946..18376195, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (18335862..18377125, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (19634280..19675358, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549211 Neighboring gene uncharacterized LOC134483898 Neighboring gene uncharacterized LOC102552716 Neighboring gene uncharacterized LOC120098837 Neighboring gene uncharacterized LOC102553246 Neighboring gene myoregulin

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Contribution of monocarboxylate transporter 12 to blood supply of creatine on the sinusoidal membrane of the hepatocytes. Jomura R, et al. Am J Physiol Gastrointest Liver Physiol, 2021 Aug 1. PMID 34075817
    2. Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations. Kolz M, et al. PLoS Genet, 2009 Jun. PMID 19503597, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carnitine transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables creatine transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables creatine transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables monocarboxylic acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in carboxylic acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in carnitine transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in creatine transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in creatine transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in urate metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    monocarboxylate transporter 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421109.1 → NP_001408038.1  monocarboxylate transporter 9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/Swiss-Prot
      M0RCI4
      UniProtKB/TrEMBL
      A6JKR0
      Related
      ENSRNOP00000067303.3, ENSRNOT00000074657.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      18334946..18376195 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099159.2 → XP_038955087.1  monocarboxylate transporter 9 isoform X2

      Conserved Domains (1) summary
      cl28910
      Location:1 → 320
      MFS; Major Facilitator Superfamily

    2. XM_039099158.2 → XP_038955086.1  monocarboxylate transporter 9 isoform X1

      Conserved Domains (1) summary
      cl28910
      Location:8 → 340
      MFS; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M0RCI4.3 GenPept UniProtKB/Swiss-Prot:M0RCI4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.