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    Prr27 proline rich 27 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289530, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Prr27provided by RGD
    Official Full Name
    proline rich 27provided by RGD
    Primary source
    RGD:1310384
    See related
    EnsemblRapid:ENSRNOG00000023342 AllianceGenome:RGD:1310384
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310384
    Summary
    Orthologous to human PRR27 (proline rich 27). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 32.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prr27 in Genome Data Viewer
    Location:
    14p21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (20511998..20527861, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (20232757..20248617, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (21882454..21898651, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352727 Neighboring gene odontogenic, ameloblast associated Neighboring gene DAZ interacting protein 1, pseudogene 1 Neighboring gene casein alpha s2-like B Neighboring gene casein alpha s2-like A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). Gonzalez-Begne M, et al. J Proteome Res, 2009 Mar. PMID 19199708, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    proline rich 27; proline-rich protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432712.1 → NP_001419641.1  proline rich 27 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      D3ZPI2

    2. NM_001432714.1 → NP_001419643.1  proline rich 27 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      D3ZPI2

    3. NM_001432717.1 → NP_001419646.1  proline rich 27 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014

    4. NM_001432738.1 → NP_001419667.1  proline rich 27 isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I5ZR72

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      20511998..20527861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273817.1 → XP_063129887.1  proline-rich protein 27 isoform X3

    2. XM_063273818.1 → XP_063129888.1  proline-rich protein 27 isoform X4

    3. XM_006250797.5 → XP_006250859.1  proline-rich protein 27 isoform X3

      Conserved Domains (1) summary
      PRK07994
      Location:130 → 291
      PRK07994; DNA polymerase III subunits gamma and tau; Validated

    4. XM_039092685.2 → XP_038948613.1  proline-rich protein 27 isoform X1

      Conserved Domains (1) summary
      PRK07994
      Location:138 → 299
      PRK07994; DNA polymerase III subunits gamma and tau; Validated

    5. XM_006250795.5 → XP_006250857.1  proline-rich protein 27 isoform X1

      Related
      ENSRNOP00000034677.7, ENSRNOT00000036314.9
      Conserved Domains (1) summary
      PRK07994
      Location:138 → 299
      PRK07994; DNA polymerase III subunits gamma and tau; Validated

    6. XM_006250796.5 → XP_006250858.1  proline-rich protein 27 isoform X2

      Conserved Domains (1) summary
      PRK07994
      Location:138 → 299
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
    Nucleotide Protein Strain
    Heading Accession and Version

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