Slc25a41 solute carrier family 25, member 41 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slc25a41provided by RGD
Official Full Name: solute carrier family 25, member 41provided by RGD
Primary source: RGD:1588585
See related: EnsemblRapid:ENSRNOG00000048853 AllianceGenome:RGD:1588585
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: SCaMC-3L
Summary: Predicted to enable ADP transmembrane transporter activity and ATP transmembrane transporter activity. Predicted to be involved in mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrion. Orthologous to human SLC25A41 (solute carrier family 25 member 41). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 26.0) See more
Orthologs: human mouse all
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Genomic context

Location:: 9q11

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (1960688..1968411, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (1873692..1881405, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (10004811..10012539)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

NoName (e-PCR)
- UniSTS:547057

Slc25a41 (e-PCR), detects polymorphism
- UniSTS:547057

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ADP transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables ADP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables ADP transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables ATP transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables ATP transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables ATP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables ATP transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in ADP transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in ADP transport	ISO Inferred from Sequence Orthology more info
involved_in ADP transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in ATP transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in ATP transport	ISO Inferred from Sequence Orthology more info
involved_in ATP transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in mitochondrial ADP transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in mitochondrial ADP transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in mitochondrial ADP transmembrane transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in mitochondrial ATP transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in mitochondrial ATP transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in mitochondrial ATP transmembrane transport	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: calcium-independent mitochondrial carrier protein SCaMC-3L

Names: SCaMC-3-like; mitochondrial ATP-Mg/Pi carrier protein; mitochondrial ATP-Mg/Pi carrier protein SLC25A41; small calcium-binding mitochondrial carrier protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106874.1 → NP_001100344.1 calcium-independent mitochondrial carrier protein SCaMC-3L

See identical proteins and their annotated locations for NP_001100344.1

Status: PROVISIONAL

Source sequence(s)

CH474092

UniProtKB/Swiss-Prot

B8ZHC9

Related

ENSRNOP00000064251.1, ENSRNOT00000074117.4

Conserved Domains (1) summary

PTZ00169
Location:23 → 305

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086027.1 Reference GRCr8

Range

1960688..1968411 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039083135.2 → XP_038939063.1 calcium-independent mitochondrial carrier protein SCaMC-3L isoform X1

UniProtKB/TrEMBL

A0A8I5ZZ25

Related

ENSRNOP00000111096.1, ENSRNOT00000149504.1

Conserved Domains (1) summary

PTZ00169
Location:49 → 331

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional