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    CHI1A chalcone--flavonone isomerase 1A [ Glycine max (soybean) ]

    Gene ID: 547602, updated on 7-Dec-2023

    Summary

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    Gene symbol
    CHI1A
    Gene description
    chalcone--flavonone isomerase 1A
    Locus tag
    GLYMA_20G241500v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    CHI; CHI1
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    Genomic context

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    See CHI1A in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (47198220..47200658)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (47259311..47261749)

    Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene probable membrane-associated kinase regulator 4 Neighboring gene uncharacterized LOC100803121 Neighboring gene chalcone--flavonone isomerase 1B-1 Neighboring gene chalcone--flavonone isomerase 2-A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of genes by mRNA differential display induced during the hypersensitive reaction of soybean after inoculation with Pseudomonas syringae pv. glycinea. Seehaus K, et al. Plant Mol Biol, 1998 Dec. PMID 9869427
    2. Partial reconstruction of flavonoid and isoflavonoid biosynthesis in yeast using soybean type I and type II chalcone isomerases. Ralston L, et al. Plant Physiol, 2005 Apr. PMID 15778463, Free PMC Article
    3. Soybean chalcone isomerase: evolution of the fold, and the differential expression and localization of the gene family. Dastmalchi M, et al. Planta, 2015 Feb. PMID 25385351
    4. Differential expression of isoflavone biosynthetic genes in soybean during water deficits. Gutierrez-Gonzalez JJ, et al. Plant Cell Physiol, 2010 Jun. PMID 20430761
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chalcone isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in flavonoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone--flavanone isomerase 1A
    Names
    Chalcone--flavanone isomerase 1
    Chalcone--flavanone isomerase 1A
    chalcone isomerase (CHI)
    chalcone isomerase 1
    chalcone isomerase 1A
    chalcone isomerase A
    chalcone isomerase RNA
    NP_001235219.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001248290.2 → NP_001235219.1  chalcone--flavanone isomerase 1A

      See identical proteins and their annotated locations for NP_001235219.1

      Status: VALIDATED

      Source sequence(s)
      ACUP04007348, AY595413
      UniProtKB/Swiss-Prot
      C6TDS7, Q93XE6
      UniProtKB/TrEMBL
      A0A0R0EFP3, C6SVP9
      Conserved Domains (1) summary
      pfam02431
      Location:9 → 210
      Chalcone; Chalcone-flavanone isomerase

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      47198220..47200658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81980.1 GenPept UniProtKB/Swiss-Prot:O81980
    Q93XE6.1 GenPept UniProtKB/Swiss-Prot:Q93XE6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases