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    LOC9656411 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [ Selaginella moellendorffii ]

    Gene ID: 9656411, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9656411
    Gene description
    tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
    Locus tag
    SELMODRAFT_443602
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9656411 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314296.1 (77102..78612, complement)

    NW_003314296.1Genomic Context describing neighboring genes Neighboring gene shikimate O-hydroxycinnamoyltransferase Neighboring gene non-specific lipid-transfer protein 3-like Neighboring gene uncharacterized LOC9657152 Neighboring gene pentatricopeptide repeat-containing protein At1g63330

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314296 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA dihydrouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314296.1 Reference v1.0

      Range
      77102..78612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002977762.2 → XP_002977808.1  tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X2

      UniProtKB/TrEMBL
      D8S2T4
      Conserved Domains (2) summary
      COG0042
      Location:46 → 345
      DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
      cd02801
      Location:53 → 279
      DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...

    2. XM_024682887.1 → XP_024538655.1  tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1

      Conserved Domains (1) summary
      cd02801
      Location:68 → 294
      DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...
    Nucleotide Protein
    Heading Accession and Version

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