Liat1 ligand of ATE1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Liat1provided by RGD
Official Full Name: ligand of ATE1provided by RGD
Primary source: RGD:1565611
See related: EnsemblRapid:ENSRNOG00000025287 AllianceGenome:RGD:1565611
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1565611; C10h17orf97
Summary: Predicted to enable molecular condensate scaffold activity. Predicted to be involved in non-membrane-bounded organelle assembly and protein arginylation. Predicted to be active in nucleolus. Orthologous to human LIAT1 (ligand of ATE1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 319.5) See more
Orthologs: human mouse all
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Genomic context

Location:: 10q24

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (61370698..61374438)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (60872529..60876191)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (64174929..64178612)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables molecular condensate scaffold activity	IBA Inferred from Biological aspect of Ancestor more info
enables molecular condensate scaffold activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in membraneless organelle assembly	ISO Inferred from Sequence Orthology more info
involved_in protein arginylation	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleolus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein LIAT1

Names: uncharacterized protein C17orf97 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.