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    Nol4l nucleolar protein 4-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362240, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nol4lprovided by RGD
    Official Full Name
    nucleolar protein 4-likeprovided by RGD
    Primary source
    RGD:1563510
    See related
    EnsemblRapid:ENSRNOG00000010417 AllianceGenome:RGD:1563510
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563510
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human NOL4L (nucleolar protein 4 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 43.6), Brain (RPKM 42.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nol4l in Genome Data Viewer
    Location:
    3q41
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (162345059..162467849, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (141884840..142007668, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (148905677..148940426, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 3B Neighboring gene uncharacterized LOC134486328 Neighboring gene ASXL transcriptional regulator 1 Neighboring gene uncharacterized LOC108350618 Neighboring gene uncharacterized LOC103691935 Neighboring gene uncharacterized LOC120101758

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar protein 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430488.1 → NP_001417417.1  nucleolar protein 4-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6KHV3

    2. NM_001430489.1 → NP_001417418.1  nucleolar protein 4-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    3. NM_001430490.1 → NP_001417419.1  nucleolar protein 4-like isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6KHV3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      162345059..162467849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039106672.2 → XP_038962600.1  nucleolar protein 4-like isoform X2

      Conserved Domains (1) summary
      pfam17921
      Location:131 → 185
      Integrase_H2C2; Integrase zinc binding domain

    2. XM_039106671.1 → XP_038962599.1  nucleolar protein 4-like isoform X1

      UniProtKB/TrEMBL
      D3ZHS3
      Related
      ENSRNOP00000104203.1, ENSRNOT00000142233.1
      Conserved Domains (1) summary
      pfam17921
      Location:131 → 185
      Integrase_H2C2; Integrase zinc binding domain

    3. XM_039106678.2 → XP_038962606.1  nucleolar protein 4-like isoform X5

      UniProtKB/TrEMBL
      A6KHV3
      Conserved Domains (1) summary
      pfam17921
      Location:15 → 50
      Integrase_H2C2; Integrase zinc binding domain

    4. XM_039106673.2 → XP_038962601.1  nucleolar protein 4-like isoform X3

      Related
      ENSRNOP00000105437.1, ENSRNOT00000169354.1
      Conserved Domains (1) summary
      pfam17921
      Location:38 → 92
      Integrase_H2C2; Integrase zinc binding domain

    5. XM_039106674.2 → XP_038962602.1  nucleolar protein 4-like isoform X4

      Conserved Domains (1) summary
      pfam17921
      Location:31 → 85
      Integrase_H2C2; Integrase zinc binding domain

    6. XM_063285085.1 → XP_063141155.1  nucleolar protein 4-like isoform X7

      UniProtKB/TrEMBL
      A6KHV3

    7. XM_039106676.2 → XP_038962604.1  nucleolar protein 4-like isoform X5

      Conserved Domains (1) summary
      pfam17921
      Location:15 → 50
      Integrase_H2C2; Integrase zinc binding domain

    8. XM_039106677.2 → XP_038962605.1  nucleolar protein 4-like isoform X5

      UniProtKB/TrEMBL
      A6KHV3
      Related
      ENSRNOP00000013881.7, ENSRNOT00000013881.7
      Conserved Domains (1) summary
      pfam17921
      Location:15 → 50
      Integrase_H2C2; Integrase zinc binding domain

    9. XM_039106675.2 → XP_038962603.1  nucleolar protein 4-like isoform X5

      Conserved Domains (1) summary
      pfam17921
      Location:15 → 50
      Integrase_H2C2; Integrase zinc binding domain

    10. XM_039106679.2 → XP_038962607.1  nucleolar protein 4-like isoform X6

      UniProtKB/TrEMBL
      A6KHV3
      Related
      ENSRNOP00000106024.1, ENSRNOT00000152449.1

    11. XM_342547.10 → XP_342548.5  nucleolar protein 4-like isoform X8

      See identical proteins and their annotated locations for XP_342548.5

      UniProtKB/TrEMBL
      A6KHV3
      Related
      ENSRNOP00000103233.1, ENSRNOT00000172561.1

    12. XM_063285086.1 → XP_063141156.1  nucleolar protein 4-like isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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