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    Cd99 CD99 molecule (Xg blood group) [ Rattus norvegicus (Norway rat) ]

    Gene ID: 652929, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cd99provided by RGD
    Official Full Name
    CD99 molecule (Xg blood group)provided by RGD
    Primary source
    RGD:1594332
    See related
    EnsemblRapid:ENSRNOG00000072482 AllianceGenome:RGD:1594332
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in T cell extravasation; homotypic cell-cell adhesion; and positive regulation of neutrophil extravasation. Predicted to act upstream of or within myeloid dendritic cell activation. Predicted to be located in cell surface. Predicted to be active in plasma membrane. Orthologous to human CD99 (CD99 molecule (Xg blood group)). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 301.4), Kidney (RPKM 234.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Cd99 in Genome Data Viewer
    Location:
    20q13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (56000494..56005140, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (54418239..54422882, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (56192426..56196961, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102556677 Neighboring gene uncharacterized LOC103694460 Neighboring gene dehydrogenase/reductase X-linked like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100804.1NP_001094274.1  CD99 antigen precursor

      See identical proteins and their annotated locations for NP_001094274.1

      Status: VALIDATED

      Source sequence(s)
      AY262357, BC168196
      UniProtKB/TrEMBL
      B4F7A5, Q4L2A2
      Related
      ENSRNOP00000106815.1, ENSRNOT00000169096.1
      Conserved Domains (1) summary
      pfam12301
      Location:52163
      CD99L2; CD99 antigen like protein 2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      56000494..56005140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099057.2XP_038954985.1  CD99 antigen isoform X3

      Conserved Domains (1) summary
      pfam12301
      Location:25134
      CD99L2; CD99 antigen like protein 2
    2. XM_039099056.2XP_038954984.1  CD99 antigen isoform X2

      UniProtKB/TrEMBL
      A6K6T0, Q4L2A2
    3. XM_063279500.1XP_063135570.1  CD99 antigen isoform X1

    4. XM_063279502.1XP_063135572.1  CD99 antigen isoform X5

    5. XM_063279501.1XP_063135571.1  CD99 antigen isoform X4

      UniProtKB/TrEMBL
      A6K6T1